Cambridge Healthtech Institute’s 27th Annual

Engineering Antibodies

New Strategies and Science for Engineering Next-Generation Biotherapeutics

May 12 - 13, 2026 ALL TIMES EDT

Antibody engineering continues to push past traditional limits, opening new frontiers in target selection, delivery, and design. The Engineering Antibodies conference brings together leaders at the cutting edge of CNS delivery, conditional activation, and small protein scaffolds to address some of the toughest challenges in biologics R&D. Sessions will delve into next-generation strategies for crossing the blood–brain barrier, improving selectivity through dual-targeting and computationally guided epitope design, and applying AI-driven scaffold evolution to minimize immunogenicity and manufacturing risks. Case studies will highlight progress with nanobodies, DARPins, intracellular antibodies, and other unconventional formats, as well as machine learning approaches for epitope discovery and liability prediction. Attendees will leave with a clearer picture of how engineering innovation is redefining what antibodies can do and where they can go.

Sunday, May 10

2:00 pmRecommended Pre-Conference Short Course

SC1: In silico and Machine Learning Tools for Antibody Design and Developability Prediction

*Separate registration required. See short course page for details.

Tuesday, May 12

1:50 pmNetworking Coffee & Dessert Break in the Exhibit Hall with Poster Viewing

2:20 pmOrganizer's Opening Remarks

PROGRESS IN ADVANCING SMALL PROTEIN SCAFFOLDS

2:25 pm

Chairperson’s Remarks

Christopher M. Koth, PhD, Vice President, Biotherapeutics, Discovery Sciences, Denali Therapeutics Inc.

2:30 pm

Lessons Learned from Comprehensive Biophysical Profiling of Clinical Stage Single Domain Antibodies

Gilad Kaplan, PhD, Director, Protein Analytics & Developability, Biologics Engineering, AstraZeneca

Single-domain antibodies (sdAbs) are compact, stable, single-chain biologics increasingly used in diagnostics, radio-immunoconjugates, and multispecifics. As a newer therapeutic format, the developability rules for sdAb containing Biologics are still emerging. We share lessons from the comprehensive biophysical profiling of >30 clinical-stage sdAbs in the VHH-Fc and VHH formats, spanning developability and manufacturability metrics, alongside preliminary in vivo PK results.

3:00 pm

Language Model Aided DARPin Maturation toward Hostile Biological Environment

Zhilei Chen, PhD, Professor, Medicinal Protein Lab, Texas A&M University

Enteric diseases are common human ailments. However, conventional biologics are not suited for enteric applications due to their susceptibility to degradation in the protease-rich hostile environment of the GI tract. Using click display, which directly links the protein library to the coding cDNA, and a language model to access "naturalness," we report the engineering of protein-stable DARPins for potent neutralization of C. difficile toxin TcdB as oral therapeutic candidates.

3:30 pm Prototype Power Play: Perfecting CHO Platforms for Next-Gen Therapeutics

Stefan Schmidt, CEO, evitria AG

Multispecific antibodies resemble an extreme diversity of formats and designs that facilitate a wide range of functionalities and modes of action. We will showcase our toolbox of technologies leveraging the full potential of algorithm supported smart transfection optimization and streamlined chromatography through a series of case studies on next-generation biotherapeutics. All examples demonstrate our powerful prototype production platform based on transient expression in CHO.

4:00 pmRefreshment Break in the Exhibit Hall with Poster Viewing

4:10 pmSpeed Networking

Speed Networking in the Exhibit Hall.  Please see Networking Events Page for more details.

SPEED NETWORKING

4:10 pm

Speed Networking: How Many New Contacts Can You Make?

Daniel Barry, Senior Conference Director, Cambridge Healthtech Institute

Bring yourself and your business cards or e-cards, and be prepared to share and summarize the key elements of your research in a minute. PEGS-Boston will provide a location, timer, and fellow attendees to facilitate the introductions.

ENGINEERING DELIVERY TO THE BRAIN

4:40 pm

Next-Generation Antibody Shuttles for CNS Protein and Nucleic Acid Delivery

Peter M. Tessier, PhD, Albert M. Mattocks Professor, Pharmaceutical Sciences & Chemical Engineering, University of Michigan

The modest ability of antibodies to penetrate the blood-brain barrier severely limits their use in therapeutic applications. We are developing antibody shuttles that target CNS proteins to mediate enhanced and selective CNS targeting and, in some cases, long-lived CNS retention. Here we will discuss our recent progress in engineering next-generation transferrin receptor and CD98hc-targeted CNS shuttles, as well as their application for delivering proteins and nucleic acids for therapeutic applications.

5:10 pm

Identification of Variable Lymphocyte Receptors That Target the Blood-Brain Barrier

Eric V. Shusta, PhD, Howard Curler Distinguished Professor, Chemical & Biological Engineering, University of Wisconsin, Madison

The blood-brain barrier presents a major obstacle to brain drug delivery. We have developed an enabling platform for the identification of blood-brain barrier targeting antibody-like molecules known as Variable Lymphocyte Receptors (VLRs). These VLRs could ultimately be used to ferry drug cargo into the brain. Here we will describe our recent efforts to identify and validate such blood-brain barrier targeting VLRs.

5:40 pm

Mechanisms Underlying Enhanced Brain Exposure by Dual-Targeting the Transferrin Receptor and CD98hc

Christopher M. Koth, PhD, Vice President, Biotherapeutics, Discovery Sciences, Denali Therapeutics Inc.

Targeting blood–brain barrier receptors enables brain delivery of biologics. We engineered an Fc-based dual transport vehicle (TV) that targets transferrin receptor (TfR) and CD98hc, combining rapid TfR-driven uptake with CD98hc-mediated retention. Dual TVs achieve higher brain concentrations than single-receptor formats. Adjusting TfR/CD98hc affinities tunes exposure kinetics and biodistribution. A mechanistic model links architectural designs to brain PK, guiding optimization of brain-penetrant biologics.

6:10 pmClose of Day

6:30 pmRecommended Dinner Short Course

SC7: Targeting the Target: Aligning Target and Biologic Format Biology to Achieve Desired Outcomes

*Separate registration required. See short course page for details.

Wednesday, May 13

8:00 amRegistration Open

PEGS YOUNG SCIENTIST KEYNOTE ALUMNI PANEL

8:25 amChairperson’s Remarks

8:30 am

Innovation in Protein Science with Young-Scientist Visionaries

PANEL MODERATOR:

James A. Wells, PhD, Professor, Departments of Pharmaceutical Chemistry and Cellular & Molecular Pharmacology, University of California, San Francisco

2026 marks the 10-year anniversary of the PEGS Young Scientist Keynote, and these honorees have been selected for their outstanding contributions to the field of protein science and engineering. Our panel of YSK alumni will discuss the recent course of these contributions and discuss the factors that allowed them to quickly launch successful labs and research groups.

PANELISTS:

Martin Pacesa, PhD, Assistant Professor, Pharmacology, University of Zurich

Jamie B. Spangler, PhD, Associate Professor, Biomedical and Chemical & Biomolecular Engineering, Johns Hopkins University

Kipp Weiskopf, MD, PhD, Head of Antibody Therapeutics and Biologics, Cancer Research Institute, Beth Israel Deaconess Medical Center; Physician, Department of Medical Oncology, Dana-Farber Cancer Institute

Timothy A. Whitehead, PhD, Professor, Chemical & Biological Engineering, University of Colorado, Boulder

Xin Zhou, PhD, Assistant Professor, Biological Chemistry & Molecular Pharmacology, Dana-Farber Cancer Institute, Harvard Medical School

9:15 amCoffee Break in the Exhibit Hall with Poster Viewing

MENTORING MEET-UP

9:20 am

Mentoring Meet-Up: Creating and Fostering a Productive and Effective Mentor-Mentee Relationship

Jonathan Davis, PhD, Founder and Principal Consultant, Creative Antibodies

Jamie B. Spangler, PhD, Associate Professor, Biomedical and Chemical & Biomolecular Engineering, Johns Hopkins University

This meet-up is designed to connect scientists that are interested in becoming a mentor as well as junior scientists who are interested in being a mentee:

  • What it takes to be a mentor
  • Finding the right match
  • Goal of Mentoring is to provide support for professional career development and informal coaching
  • The Mentor: Mentee relationship: you get out of it what you put into it
  • Establishing boundaries and clear action items to make the most of the experience
  • How can having a mentor help you?
  • What kind of time commitment does being a mentee entail?
  • How many mentors do I need?​

PANEL DISCUSSION

10:05 am PANEL DISCUSSION:

Near-Term Challenges for ML/AI in Biotherapeutic R&D

PANEL MODERATOR:

Peter M. Tessier, PhD, Albert M. Mattocks Professor, Pharmaceutical Sciences & Chemical Engineering, University of Michigan

This discussion will explore the key questions shaping how AI and machine learning are deployed in biologics R&D today. The discussion will address data readiness, the feasibility of designing complex targets, and the boundaries of current predictive capabilities. Panelists will also consider practical workflow strategies and identify where AI already provides measurable impact, as well as future opportunities such as immunogenicity prediction. Discussion topics include:  

  • Data Foundations for AI: To what extent have new data-generation and curation efforts resolved challenges of scarcity and quality, and where should organizations continue investing to support reliable AI training?      
  • AI for Complex Biologics: How effectively can AI support de novo design and optimization of difficult targets—such as membrane proteins and multispecific antibodies—and what limitations still remain?
  • Predictive Power Today: Which physical, structural, and developability properties can AI models reliably predict now, and which remain too complex or poorly understood for accurate modeling?
  • Workflow Strategy: Zero-Shot vs. Lab-in-the-Loop: Is true zero-shot design a plausible long-term goal, or will iterative experimental feedback continue to be essential for robust biologics development?
  • Future Capabilities and Priorities: Which concrete problems is ML/AI already solving in antibody and biologics R&D, where should the field focus next, and will emerging models eventually enable accurate prediction of immunogenicity?​
PANELISTS:

Andrew Buchanan, PhD, FRSC, Head of Discovery, Stealth Mode Biotech

Norbert Furtmann, PhD, Head, Biologics AI & Design, Computational and AI Strategy, Sanofi

Konrad S. Krawczyk, PhD, Founder & CSO, NaturalAntibody SA

Andrew C.R. Martin, DPhil, Emeritus Professor of Bioinformatics and Computational Biology, University College London

Melody Shahsavarian, PhD, Senior Director, Data Strategy & Digital Transformation, Biotherapeutics Discovery Research, Eli Lilly & Company

Bernhardt L. Trout, PhD, Professor, Chemical Engineering, Massachusetts Institute of Technology

11:05 am Accelerating Antibody Discovery: Integrating Microfluidics, HT Expression, and Early Developability Platform

Lei Shi, Senior Vice President, R&D, Biointron

Increasingly, antibody drug development requires quick and holistic assessment from the discovery stage with a powerful platform, which demands experienced scientists making smart and strategic choices. We will discuss how Biointron's unique single B cell sorting-based antibody screening can help identify a population of diverse and functional hits with shortened timeline. Integrated with our high-through-put expression, validation and developability assay platforms, the path from hits to candidate can be more efficient with data beyond just binding and time less spent.

11:35 amSession Break

11:40 am LUNCHEON PRESENTATION: A Binder Is Not Enough: Combining Antibody Discovery and Engineering through Cellestive

John Kenney, President, Antibody Solutions

Over the last 10 years, antibody discovery has become increasingly complex: difficult targets, different antibody sources, and diverse therapeutic modalities are just some considerations. This, combined with short timelines and shifting priorities, makes completing a project ever more challenging. Cellestive couples antibody discovery with engineering to address difficult targets and exploit different B-cell types and format options in a fast, efficient, flexible, and cost-effective manner.

12:10 pm LUNCHEON PRESENTATION: The Specifica Gen3 Bispecific Platform: Functional, Developable Bispecific Constant Light-Chain Antibodies

Adeline Fanni, Associate Principal Scientist, Lab Science, IQVIA Laboratories

INTERACTIVE BREAKOUT DISCUSSIONS

12:40 pmFind Your Table and Meet Your Discussion Moderator
12:50 pmInteractive Roundtable Discussions

Interactive Roundtable Discussions are informal, moderated discussions, allowing participants to exchange ideas and experiences and develop future collaborations around a focused topic. Each discussion will be led by a facilitator who keeps the discussion on track and the group engaged. To get the most out of this format, please come prepared to share examples from your work, be a part of a collective, problem-solving session, and participate in active idea sharing. Please visit the Interactive Roundtable Discussions page on the conference website for a complete listing of topics and descriptions. 

TABLE 1: Optimizing the CNS Delivery of Biotherapeutics

Christopher M. Koth, PhD, Vice President, Biotherapeutics, Discovery Sciences, Denali Therapeutics Inc.

  • Receptor selection & biology: What’s the most translatable biology across species?
  • From uptake to pharmacology: Optimizing manufacturable LM brain-delivery architectures to achieve the right exposure, engagement, and efficacy 
  • Moving beyond brain "uptake:" Taking a granular look at where the drug goes and how long it stays
  • Emerging strategies to optimize CNS targeting and exposure: Next gen payloads and dual targeting​

TABLE 2: Strategies and Metrics for Discovering Drug-Like Internalizing Antibodies

Jie Zhou, PhD, Assistant Professor, Radiation and Cellular Oncology, Chemistry, University of Chicago

  • Why internalization varies across binders to the same antigen: epitope, receptor trafficking, avidity/format, and how to screen for “productive” uptake (vs surface binding only)
  • Selection strategies for internalizing antibodies: functional display/selection concepts (e.g., uptake-coupled screens) and how they compare to conventional affinity-first discovery
  • Assays and metrics that predict downstream performance: internalization kinetics, lysosomal routing vs recycling, payload delivery readouts, and what correlates best with in vivo activity
  • Developability-by-design: how to incorporate stability, expression, aggregation, and sequence liabilities early so internalizing hits translate into drug-like leads
  • Applications beyond ADCs: targeted protein downregulation, extracellular targeted protein degradation, and cargo delivery—what properties matter for each modality​

MACHINE-LEARNING USE CASES IN PROTEIN ENGINEERING

1:35 pm

Chairperson’s Remarks

Gilad Kaplan, PhD, Director, Protein Analytics & Developability, Biologics Engineering, AstraZeneca

1:40 pm

PROPERMAB: An Integrative Framework for in silico Prediction of Antibody Developability Using Machine Learning

Bian Li, PhD, Principal Scientist, Therapeutic Proteins, Regeneron

Accurately predicting developability characteristics is a pivotal yet challenging task in antibody therapeutic development. To overcome the limitations of small training datasets, we designed and implemented an integrative antibody feature engineering and machine learning framework called PROPERMAB. Using this framework, we developed predictive models for antibody hydrophobic interaction chromatography retention time and high-concentration viscosity. We also demonstrate the potential to scale our approach to repertoire-scale sequence datasets.

2:10 pm

AbBiBench: AI Benchmark Framework for Antibody Affinity Maturation and Design

Yejin Kim, PhD, Associate Professor, Department of Health Data Science and Artificial Intelligence, University of Texas Health Science Center at Houston

AbBiBench is a novel AI benchmarking framework designed to improve antibody binding affinity maturation by evaluating the entire antibody-antigen (Ab-Ag) complex as a single functional unit. By curating over 216,500 experimental measurements across diverse antigens like influenza and SARS-CoV-2, we created a rigorous system to assess 18 different computational models. The findings reveal that global structure-conditioned inverse folding models significantly outperform sequence-only or local-structure methods in predicting binding potential. Furthermore, the authors validated their pipeline through in vitro ELISA assays, successfully identifying new antibody variants with enhanced binding to the H1N1 influenza virus. Ultimately, AbBiBench provides a standardized, zero-leakage environment to guide the development of next-generation machine learning workflows for therapeutic antibody discovery.

2:40 pm

KEYNOTE PRESENTATION: Unbiased Deep Screening of Antibody-Antigen Interactions

Timothy A. Whitehead, PhD, Professor, Chemical & Biological Engineering, University of Colorado, Boulder

Massive, quantitative datasets on sequence-binding potency are necessary for training AI to learn antibody-antigen molecular recognition. My group has developed quantitative cDNA and yeast display platforms for evaluating antibody-antigen interactions at scale. In unpublished work, we use yeast-based MAGMA-seq (Petersen et al, NCOMMS 2024; Kirby et al PNAS 2025) to identify antigen sequences recognized by the germline-encoded human antibody repertoire. I’ll also describe a new cDNA-based library on library assay.

3:10 pm End-to-End AI Applications for Advanced Antibody Engineering

Patrick Doonan, Director, Alliance Management, Alliance Management, Ailux

Ailux is an AI-native biologics innovation company advancing the next generation of biotherapeutics through the seamless integration of data, artificial intelligence, and experimental science. Ailux's platform synergistically combines the best of our comprehensive wet lab, AtlaX biologics database, and three proprietary AI engines. We will present our latest case studies that exemplify our AI-driven approach to advanced antibody engineering. This presentation provides our realistic and evidence-based perspective on AI’s impact on developing next-generation antibody therapeutics.

3:40 pmIce Cream & Coffee Break in the Exhibit Hall with Poster Viewing

CHALLENGING TARGETS AND PATHWAYS

4:20 pm

Engineering Cytokine Agonists for Therapeutic Applications

Shion Lim, PhD, Principal Scientist & Group Leader, Genentech

Cytokines are vital for anti-tumor immunity but face several limitations as therapeutic molecules, including pleiotropic activity, poor stability and half-life, and dose-limiting toxicity. Different engineering approaches to modify the cytokine or turning to alternative formats such as antibody mimetics exist to address these limitations. In this talk, we describe engineering approaches undertaken to develop cytokine Fc fusion and mimetics for IL-27 agonism.

4:50 pm

Harnessing Endocytosis with Viral Display to Select Highly-Developable Internalizer for Precision Therapy


Jie Zhou, PhD, Assistant Professor, Radiation and Cellular Oncology, Chemistry, University of Chicago

Internalizing antibodies underpin multiple targeted therapeutic modalities, including receptor-downregulating antagonists, antibody-drug conjugates (ADCs), extracellular targeted protein degraders (eTPDs), and targeted cargo delivery systems. Yet most antibody discovery platforms optimize binding rather than the ability to induce rapid, productive endocytosis, which is governed by epitope, binding geometry, and downstream trafficking. We present a lentiviral selection platform that couples receptor-mediated endocytosis to a genetic readout, enabling direct enrichment of internalizing, developable antibodies.


5:20 pm

De novo Design of a Peptide Modulator to Reverse Sodium Channel Dysfunction Linked to Cardiac Arrhythmias and Epilepsy

Manu Ben-Johny, PhD, Assistant Professor, Physiology and Cellular Biophysics, Colombia University

Voltage-gated sodium channels initiate action potentials in neurons and muscle. Dysfunction of these channels leads to sustained sodium influx that underlies various human diseases including cardiac arrhythmias and epilepsy. We used de novo protein design to engineer a peptide modulator that restores the proper function of these ion channels. These studies demonstrate the therapeutic potential of rationally designed biologic agents for correcting ion-channel dysfunction across cardiac and neurological disease settings.

5:50 pm

Antibodies Expand the Scope of GPCR Pharmacology

Meredith A. Skiba, PhD, Assistant Professor, Biological Chemistry, University of Michigan

G protein-coupled receptors (GPCRs) are among the most successful therapeutic targets, but their pharmacological landscape is dominated by small molecules. Antibodies have the potential to target GPCRs with enhanced specificity and differing pharmacokinetic properties, but few antibodies modulate GPCR function. We developed several strategies to discover functionally active, GPCR-targeting, synthetic antibody fragments. These antibodies exhibit rich and readily evolvable pharmacology, attesting to their potential as next-generation GPCR therapeutics.

6:20 pmNetworking Reception in the Exhibit Hall with Poster Viewing

7:20 pmClose of Engineering Antibodies Conference





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